Tag «protein and»: downloads

Search results for «protein and»:

CLC Protein Workbench 2.2 by CLC bio

CLC Protein Workbench provides a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

CLC Protein Workbench is a software solution for scientists and lab researchers working with biochemistry.

Some analyses a… 

Translate widget 0.7 by Ian York

Translate widget is a DNA and protein manipulation for molecular biologists.

Translate widget is a DNA/protein conversion and manipulation widget.

Translates (DNA to protein), reverse translates (protein to DNA), makes antisense strand, formats sequence, scrambles sequences.

Here are some… 

Protein Family Alignment Annotation Tool 1.0.123 by Pfizer Discovery Technology Center

Pfaat is a Java-based protein sequence alignment application designed to facilitate the analysis, curation, and annotation of large protein sequence families.

Key features of Pfaat include the ability to align collections of sequences, cluster and/or group sequences into subfamilies, analyze sequ… 

FoldIt light 5.1 by Jean-Claude Jesior

'FoldIt light' is a molecular modelling program to visualize and manipulate interactively protein structure files from the Brookhaven Protein Data Bank (PDB). It's an integrated environment allowing 3D manipulations as well as statistical analysis.

Protein structures can be manipulated easily in… 

Pfaat 1.0 by Pfizer Discovery Technology Center

Pfaat is a Java-based protein sequence alignment application designed to facilitate the analysis, curation, and annotation of large protein sequence families.… 

BioWorks 1.0 by Anubis Inc.

BioWorks is a DNA manipulation software. Customize your editor with the colors and toolbar functions you want. Convert to Protein and RNA sequences. Create Graphical and Text Resource Maps and PH maps.

Here are some key features of "BioWorks":
DNA Features:
Manipulate DNA sequences of unlim… 

Protean Updater 7.0 by DNASTAR

Protean helps you predict and display patterns, secondary structural characteristics and physicochemical properties of protein sequences via its comprehensive suite of protein analysis tools.

Protean's simple, elegant graphical user interface can also help you locate antigenic determinants and pr… 

Protein Molar Converter Widget 1.1 by AbOrygen

The Protein Molar Converter widget allows to perform molar conversions for proteins according to size.

What's New:
You can now perform conversions from the protein size field.… 

BLAST 2.2.13 by NCBI

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships b… 

Structure 1.0.2 by Benjamin Blonder

Structure is a screensaver for Mac OS X that draws on the National Center for Biotechnology Information's protein databases to display beautiful 3D protein structures on your screen. It ships with about ten sample structures and via the Internet has seamless access to a database of tens of thousands… 

Folding@home 3.2.5 by Vijay Pande/Stanford University

What does Folding@Home do? Folding@Home is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases.

We use novel computational methods and large scale distributed computing to simulate timescales thousands to millions of times longer than previ… 

ProtParam 1.1 by AbOrygen

The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy.

You just have to type or paste your sequence in the input field.

This widget is free for all users. Download it now !

What's New:
The search field was improved.… 

MODELLER 8v1 by Andrej Sali

MODELLER is used for homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms.

MODELLER implements comparative… 

CLC Combined Workbench 2.2 by CLC bio

This 2 x 2 weeks of fully functional demo of CLC Combined Workbench 1.0.1 aggregates all DNA sequence analyses of CLC Gene Workbench and all protein sequence analyses of CLC Protein Workbench.

All analyses are fully integrated in one single, user-friendly, and intuitive software application.

… 

ProteinGlimpse 1.3 by Jaime Fernandez Vera

ProteinGlimpse is a free widget for visualizing macromolecules retrieved from the Protein Data Bank.

It is powered by Jmol, a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. It was inspired by the FirstGlance in Jmol project.

This widge… 

A/G Blast 2.2.10 by Apple

Apple/Genentech BLAST is a popular open source biotechnology application used by life science researchers to find matches in DNA and protein sequences, a highly processor-intensive task.
Developed by ACG in collaboration with Genentech, Inc. and the Stanford University Genetics Department, Apple/G… 

CCP4MG 0.12.1 by Liz Potterton

CCP4MG is a protein and nucleic acid structure viewer.

Here are some key features of "CCP4MG":
load multiple molecules (from PDB or mmCIF files) and display as cylinders, ball and stick, spheres, ribbons, worms and surfaces
Extensive options to select and colour molecules
calculate hydrogen… 

Sequence Analysis 1.6 by Will Gilbert

Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence for… 

Transform 0.9.11 by Markus Winter

I find Excel to be brilliant for making pretty sequences and sequence alignments - however each character needs to be in a separate cell.
So I wrote a little utility to do often used text / sequence transformations.

Here are some key features of "Transform":
Insert Tab before / after each char… 

SPDBV 3.7 by GlaxoSmithKline R&D

Swiss-PdbViewer (SPDBV) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds… 

Related: protein and  protein  and protein  protein protein  protein structures  protein structure  protein folding